E. Virginia Armbrust

Ginger_Armbrust.jpg

Principal Investigator

armbrust at uw.edu

Phytoplankton are the main focus of research in our lab. These organisms are responsible for about 50% of the total amount of photosynthesis that occurs on our planet. They play a critical role in the global carbon cycle and ultimately in global climate. Because much of the organic carbon generated by phytoplankton is used by bacteria and archaea, we study phytoplankton interactions with other microbes.

Education

  • Ph.D., Massachusetts Institute of Technology and Woods Hole Oceanographic Institution, Biological Oceanography, 1990. Thesis advisor: Sallie W. Chisholm. Thesis title: The Life Cycle of the Centric Diatom Thalassiosira weissflogii: Control of Gametogenesis and Cell Size.
  • B.A., Stanford University, Human Biology, 1980.

Positions Held

  • Associate Dean of Research, College of the Environment, University of Washington, 2024- present.
  • Karl M. Banse Endowed Professor, University of Washington, 2024-present.
  • Richard H. Fleming Endowed Professor, University of Washington, 2022-2024.
  • Professor School of Oceanography, University of Washington, 2006-present.
  • Director, School of Oceanography, University of Washington, 2011-2018.
  • Lowell A. and Frankie L. Wakefield Endowed Professor, University of Washington, 2008-2018.
  • Associate Professor, School of Oceanography, University of Washington, 2002- 2006.
  • Assistant Professor, School of Oceanography, University of Washington, 1996-2002.
  • NSF Marine Biotechnology and Ocean Sciences Postdoctoral Fellow, Department of Biology, Washington University, 1990-1995.
  • Graduate Research Assistant, Biological Oceanography, Massachusetts Institute of Technology, 1983-1990
  • Research Technician, Moss Landing Marine Laboratories, 1981-1983
  • Research Technician, California Department of Fish and Game, 1980-1981

Honors

  • Karl M. Banse Endowed Professor, University of Washington, 2024-present.
  • Elected Fellow, Amercan Geophysical Union, 2022.
  • Richard H. Fleming Endowed Professor, 2022- 2024.
  • Luigi Provasoli award for best publication of 2016 in Journal of Phycology, 2017.
  • AGU Carson Lecture, 2016
  • Gordon and Betty Moore Foundation Marine Microbiology Investigator 2012-2018
  • Elected Member, Washington State Academy of Science, 2012
  • Elected Fellow, American Association for the Advancement of Science (AAAS), 2012
  • Elected Fellow, American Academy of Microbiology, 2011
  • Distinguished Graduate Teaching Award, College of Ocean and Fishery Sciences, 2009
  • Botanical Society of America Darbaker Prize for meritorious work on algae, 2008
  • Lowell A. and Frankie L. Wakefield Professor, 2008-2018
  • Luigi Provasoli award for best publication of 2005 in Journal of Phycology, 2006
  • Distinguished Research Award, College of Ocean and Fishery Sciences, 2005
  • Gordon and Betty Moore Foundation Marine Microbiology Investigator 2004-2012
  • Distinguished Graduate Teaching Award, College of Ocean and Fishery Sciences, 2001
  • Distinguished Graduate Teaching Award, College of Ocean and Fishery Sciences, 1999

Oceanographic Research Cruises

Recent, Chief Scientist

  • Gradients cruise 5, Equatorial Pacific Ocean, R/V Thompson, January 22 - February 18, 2023.
  • Gradients cruise 4, Equatorial Pacific Ocean, R/V Thompson, November 10-December 17, 2021.
  • Gradients cruise 3, North Pacific Ocean, R/V Kilo Moana, April, 2019
  • Gradients cruise 2, North Pacific Ocean, R/V Langseth, May/June, 2017.
  • Gradients cruise 1, North Pacific Ocean, R/V KOK, April/May, 2016.
  • Dimensions of Biodiversity cruise, North Pacific Ocean, R/V Kilo Moana, August/September, 2013.
  • Molecular biogeochemical cruise, Washington Coast, R/V Thompson, May, 2012.

Participation in 16 additional cruises; Lab participation in 23 additional cruises

Publications

2025

2025

  1. Simultaneous acclimation to nitrogen and iron scarcity in open ocean cyanobacteria revealed by sparse tensor decomposition of metatranscriptomes
    Stephen Blaskowski, Marie Roald, Paul M. Berube, Rogier Braakman, and E. Virginia Armbrust
    Science Advances, Apr 2025
    DOI: 10.1126/sciadv.adr4310
  2. Proportional relationship between transcript concentrations and carbon biomass for open ocean plankton groups
    Sacha N Coesel, Shiri Graff Creveld, Mathilde Dugenne, Fernanda Henderikx-Freitas, Angelicque E White, and E Virginia Armbrust
    The ISME Journal, Apr 2025
    DOI: 10.1093/ismejo/wraf079
  3. Efficient cobalamin uptake and cycling contribute to the lack of cobalamins in the surface cobalt-binding ligand pool in the North Pacific
    Jiwoon Park, Katherine R. Heal, Anitra E. Ingalls, Ryan D. Groussman, Zinka Bartolek, E. Virginia Armbrust, and Randelle M. Bundy
    Limnology and Oceanography Letters, 2025
    DOI: 10.1002/lol2.70019
  4. Anthropogenic iron alters the spring phytoplankton bloom in the North Pacific transition zone
    Nicholas J. Hawco, Tim M. Conway, Sacha N. Coesel, Benedetto Barone, Emily A. Seelen, Shun-Chung Yang, Randelle M. Bundy, Paulina Pinedo-Gonzalez, Xiaopeng Bian, Matthias Sieber, Nathan T. Lanning, Jessica N. Fitzsimmons, Rhea K. Foreman, Daniela König, Mora J. Groussman, James G. Allen, Lauren W. Juranek, Angelicque E. White, David M. Karl, E. Virginia Armbrust, and Seth G. John
    Proceedings of the National Academy of Sciences, Jun 2025
    DOI: 10.1073/pnas.2418201122
  5. Shifts in phytoplankton community structure across oceanic boundaries
    Jordan Winter, Annette Hynes, Chris Berthiaume, Kelsy Cain, E. Virginia Armbrust, and François Ribalet
    PLOS ONE, Jun 2025
    DOI: 10.1371/journal.pone.0324466
  6. Characterizing organisms from three domains of life with universal primers from throughout the global ocean
    Jesse McNichol, Nathan L. R. Williams, Yubin Raut, Craig Carlson, Elisa R. Halewood, Kendra Turk-Kubo, Jonathan P. Zehr, Andrew P. Rees, Glen Tarran, Mary R. Gradoville, Matthias Wietz, Christina Bienhold, Katja Metfies, Sinhué Torres-Valdés, Thomas Mock, Sarah Lena Eggers, Wade Jeffrey, Joseph Moss, Paul Berube, Steven Biller, Levente Bodrossy, Jodie Van De Kamp, Mark Brown, Swan L. S. Sow, E. Virginia Armbrust, and Jed Fuhrman
    Scientific Data, Jul 2025
    DOI: 10.1038/s41597-025-05423-9
  7. Latitude- and depth-driven divergence in protist trophic strategies revealed by a machine learning model
    Elaina Thomas, Mora J. Groussman, Sacha N. Coesel, Nicholas J. Hawco, Randelle M. Bundy, and E. Virginia Armbrust
    Frontiers in Microbiology, Sep 2025
    DOI: 10.3389/fmicb.2025.1602162
  8. Future ocean warming may cause large reductions in Prochlorococcus biomass and productivity
    François Ribalet, Stephanie Dutkiewicz, Erwan Monier, and E. Virginia Armbrust
    Nature Microbiology, Sep 2025
    DOI: 10.1038/s41564-025-02106-4
  9. A prototype submersible sheathless flow cytometer designed for autonomous platforms
    J. E. Swalwell, K. Cain, and E. V. Armbrust
    Limnology and Oceanography: Methods, Oct 2025
    DOI: 10.1002/lom3.70007

2024

2024

  1. Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre
    Stephen J. Beckett, David Demory, Ashley R. Coenen, John R. Casey, Mathilde Dugenne, Christopher L. Follett, Paige Connell, Michael C. G. Carlson, Sarah K. Hu, Samuel T. Wilson, Daniel Muratore, Rogelio A. Rodriguez-Gonzalez, Shengyun Peng, Kevin W. Becker, Daniel R. Mende, E. Virginia Armbrust, David A. Caron, Debbie Lindell, Angelicque E. White, François Ribalet, and Joshua S. Weitz
    Nature Communications, Mar 2024
    DOI: 10.1038/s41467-024-46165-3
  2. Multiple biotic interactions establish phytoplankton community structure across environmental gradients
    Stephanie Dutkiewicz, Christopher L. Follett, Michael J. Follows, Fernanda Henderikx-Freitas, Francois Ribalet, Mary R. Gradoville, Sacha N. Coesel, Hanna Farnelid, Zoe V. Finkel, Andrew J. Irwin, Oliver Jahn, David M. Karl, Jann Paul Mattern, Angelicque E. White, Jonathan P. Zehr, and E. Virginia Armbrust
    Limnology and Oceanography, 2024
    DOI: 10.1002/lno.12555
  3. New eukaryotic phytoplankton isolates from the oligotrophic tropical Pacific Ocean
    Shiri Creveld, Sacha N. Coesel, Megan J. Schatz, and E. Virginia Armbrust
    Journal of Phycology, 2024
    DOI: 10.1111/jpy.13447
  4. High-frequency sampling captures variability in phytoplankton population-specific periodicity, growth, and productivity
    Annette M. Hynes, Jordan Winter, Chris T. Berthiaume, Eric Shimabukuro, Kelsy Cain, Angelicque White, E. Virginia Armbrust, and François Ribalet
    Limnology and Oceanography, 2024
    DOI: 10.1002/lno.12683
  5. Amplicon Sequencing with Internal Standards Yields Accurate Picocyanobacteria Cell Abundances as Validated with Flow Cytometry
    Alexandra E Jones-Kellett, Jesse C McNichol, Yubin Raut, Kelsy R Cain, François Ribalet, E Virginia Armbrust, Michael J Follows, and Jed A Fuhrman
    ISME Communications, Sep 2024
    DOI: 10.1093/ismeco/ycae115
  6. The North Pacific Eukaryotic Gene Catalog of metatranscriptome assemblies and annotations
    R. D. Groussman, S. N. Coesel, B. P. Durham, M. J. Schatz, and E. V. Armbrust
    Scientific Data, Oct 2024
    DOI: 10.1038/s41597-024-04005-5
  7. Latitudinal patterns in ocean C:N:P reflect phytoplankton acclimation and macromolecular composition
    Justin D. Liefer, Angelicque E. White, Zoe V. Finkel, Andrew J. Irwin, Mathilde Dugenne, Keisuke Inomura, François Ribalet, E. Virginia Armbrust, David M. Karl, Matthew H. Fyfe, Christopher M. Brown, and Michael J. Follows
    Proceedings of the National Academy of Sciences, Nov 2024
    DOI: 10.1073/pnas.2404460121

2023

2023

  1. Nitrogen Fixation in Mesoscale Eddies of the North Pacific Subtropical Gyre: Patterns and Mechanisms
    Mathilde Dugenne, Mary R. Gradoville, Matthew J. Church, Samuel T. Wilson, Uri Sheyn, Matthew J. Harke, Karin M. Björkman, Nicholas J. Hawco, Annette M. Hynes, François Ribalet, David M. Karl, Edward F. DeLong, Sonya T. Dyhrman, E. Virginia Armbrust, Seth John, John M. Eppley, Katie Harding, Brittany Stewart, Ana M. Cabello, Kendra A. Turk-Kubo, Mathieu Caffin, Angelicque E. White, and Jonathan P. Zehr
    Global Biogeochemical Cycles, 2023
    DOI: 10.1029/2022GB007386
  2. Siderophore production and utilization by marine bacteria in the North Pacific Ocean
    Jiwoon Park, Bryndan P. Durham, Rebecca S. Key, Ryan D. Groussman, Zinka Bartolek, Paulina Pinedo-Gonzalez, Nicholas J. Hawco, Seth G. John, Michael C. G. Carlson, Debbie Lindell, Lauren W. Juranek, Sara Ferrón, Francois Ribalet, E. Virginia Armbrust, Anitra E. Ingalls, and Randelle M. Bundy
    Limnology and Oceanography, 2023
    DOI: 10.1002/lno.12373
  3. Divergent functions of two clades of flavodoxin in diatoms mitigate oxidative stress and iron limitation
    Shiri Creveld, Sacha N Coesel, Stephen Blaskowski, Ryan D Groussman, Megan J Schatz, and E Virginia Armbrust
    eLife, Jun 2023
    DOI: 10.7554/eLife.84392
  4. MarFERReT, an open-source, version-controlled reference library of marine microbial eukaryote functional genes
    R. D. Groussman, S. Blaskowski, S. N. Coesel, and E. V. Armbrust
    Scientific Data, Dec 2023
    DOI: 10.1038/s41597-023-02842-4

2022

2022

  1. Trophic interactions with heterotrophic bacteria limit the range of Prochlorococcus
    Christopher L. Follett, Stephanie Durkiewicz, François Ribalet, Emily Zakem, E.Virginia Armbrust David Caron, and Michael J. Follows
    Proceedings National Academy of Science, 2022
    DOI: 10.1073/pnas.2110993118
  2. The dynamic trophic architecture of open-ocean protist communities revealed through machine-guided metatranscriptomics
    Bennett S. Lambert, Ryan D. Groussman, Megan J. Schatz, Sacha N. Coesel, Bryndan P. Durham, Andrew J. Alverson, Angelicque E. White, and E. Virginia Armbrust
    Proceedings of the National Academy of Sciences, Feb 2022
    DOI: 10.1073/pnas.2100916119
  3. A Bayesian approach to modeling phytoplankton population dynamics from size distribution time series
    Jann Paul Mattern, Kristof Glauninger, Gregory L. Britten, John R. Casey, Sangwon Hyun, Zhen Wu, E. Virginia Armbrust, Zaid Harchaoui, and François Ribalet
    PLOS Computational Biology, Jan 2022
    DOI: 10.1371/journal.pcbi.1009733
  4. Chemotaxonomic patterns in intracellular metabolites of marine microbial plankton
    Bryndan P. Durham, Angela K. Boysen, Katherine R. Heal, Laura T. Carlson, Rachel Boccamazzo, Chloe R. Deodato, Wei Qin, Rose Ann Cattolico, E. Virginia Armbrust, and Anitra E. Ingalls
    Frontiers in Marine Science, 2022
  5. Complex marine microbial communities partition metabolism of scarce resources over the diel cycle
    Daniel Muratore, Angela K. Boysen, Matthew J. Harke, Kevin W. Becker, John R. Casey, Sacha N. Coesel, Daniel R. Mende, Samuel T. Wilson, Frank O. Aylward, John M. Eppley, Alice Vislova, Shengyun Peng, Rogelio A. Rodriguez-Gonzalez, Stephen J. Beckett, E. Virginia Armbrust, Edward F. DeLong, David M. Karl, Angelicque E. White, Jonathan P. Zehr, Benjamin A. S. Van Mooy, Sonya T. Dyhrman, Anitra E. Ingalls, and Joshua S. Weitz
    Nature Ecology & Evolution, Feb 2022
    DOI: 10.1038/s41559-021-01606-w
  6. Flavobacterial exudates disrupt cell cycle progression and metabolism of the diatom Thalassiosira pseudonana
    Zinka Bartolek, Shiri Graff van Creveld, Sacha Coesel, Kelsy R. Cain, Megan Schatz, Rhonda Morales, and E. Virginia Armbrust
    The ISME Journal, Dec 2022
    DOI: 10.1038/s41396-022-01313-9
  7. Glycine betaine uptake and metabolism in marine microbial communities
    Angela K. Boysen, Bryndan P. Durham, William Kumler, Rebecca S. Key, Katherine R. Heal, Laura T. Carlson, Ryan D. Groussman, E. Virginia Armbrust, and Anitra E. Ingalls
    Environmental Microbiology, 2022
    DOI: 10.1111/1462-2920.16020
  8. Viruses affect picocyanobacterial abundance and biogeography in the North Pacific Ocean
    Michael C. G. Carlson, François Ribalet, Ilia Maidanik, Bryndan P. Durham, Yotam Hulata, Sara Ferrón, Julia Weissenbach, Nitzan Shamir, Svetlana Goldin, Nava Baran, B. B. Cael, David M. Karl, Angelicque E. White, E. Virginia Armbrust, and Debbie Lindell
    Nature Microbiology, Apr 2022
    DOI: 10.1038/s41564-022-01088-x

2021

2021

  1. A kernel-based change detection method to map shifts in phytoplankton communities measured by flow cytometry
    Corinne Jones, Sophie Clayton, François Ribalet, E. Virginia Armbrust, and Zaid Harchaoui
    Methods in Ecology and Evolution, 2021
    DOI: 10.1111/2041-210X.13647
  2. A single-cell polony method reveals low levels of infected Prochlorococcus in oligotrophic waters despite high cyanophage abundances
    Noor Mruwat, Michael C. G. Carlson, Svetlana Goldin, François Ribalet, Shay Kirzner, Yotam Hulata, Stephen J. Beckett, Dror Shitrit, Joshua S. Weitz, E. Virginia Armbrust, and Debbie Lindell
    The ISME Journal, Jan 2021
    DOI: 10.1038/s41396-020-00752-6
  3. Diel Transcriptional Oscillations of a Plastid Antiporter Reflect Increased Resilience of Thalassiosira pseudonana in Elevated CO2
    Jacob J. Valenzuela, Justin Ashworth, Allison Cusick, Raffaela M. Abbriano, E. Virginia Armbrust, Mark Hildebrand, Mónica V. Orellana, and Nitin S. Baliga
    Frontiers in Marine Science, 2021
  4. Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities
    Sacha N. Coesel, Bryndan P. Durham, Ryan D. Groussman, Sarah K. Hu, David A. Caron, Rhonda L. Morales, François Ribalet, and E. Virginia Armbrust
    Proceedings of the National Academy of Sciences, Feb 2021
    DOI: 10.1073/pnas.2011038118
  5. Diel-Regulated Transcriptional Cascades of Microbial Eukaryotes in the North Pacific Subtropical Gyre
    Ryan D. Groussman, Sacha N. Coesel, Bryndan P. Durham, and E. Virginia Armbrust
    Frontiers in Microbiology, 2021
  7. Marine Community Metabolomes Carry Fingerprints of Phytoplankton Community Composition
    Katherine R. Heal, Bryndan P. Durham, Angela K. Boysen, Laura T. Carlson, Wei Qin, François Ribalet, Angelicque E. White, Randelle M. Bundy, E. Virginia Armbrust, and Anitra E. Ingalls
    mSystems, May 2021
    DOI: 10.1128/mSystems.01334-20
  8. Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean
    Angela K. Boysen, Laura T. Carlson, Bryndan P. Durham, Ryan D. Groussman, Frank O. Aylward, François Ribalet, Katherine R. Heal, Angelicque E. White, Edward F. DeLong, E. Virginia Armbrust, and Anitra E. Ingalls
    mSystems, May 2021
    DOI: 10.1128/mSystems.00896-20
  9. Simons Collaborative Marine Atlas Project (Simons CMAP): An open-source portal to share, visualize, and analyze ocean data
    Mohammad D. Ashkezari, Norland R. Hagen, Michael Denholtz, Andrew Neang, Tansy C. Burns, Rhonda L. Morales, Charlotte P. Lee, Christopher N. Hill, and E. Virginia Armbrust
    Limnology and Oceanography: Methods, 2021
    DOI: 10.1002/lom3.10439

2020

2020

  1. Anthropogenic Asian aerosols provide Fe to the North Pacific Ocean
    Paulina Pinedo-González, Nicholas J. Hawco, Randelle M. Bundy, E. Virginia Armbrust, Michael J. Follows, B. B. Cael, Angelicque E. White, Sara Ferrón, David M. Karl, and Seth G. John
    Proceedings of the National Academy of Sciences, Nov 2020
    DOI: 10.1073/pnas.2010315117
  2. Diel oscillations in the feeding activity of heterotrophic and mixotrophic nanoplankton in the North Pacific Subtropical Gyre
    Paige E. Connell, François Ribalet, E. Virginia Armbrust, Angelicque White, and David A. Caron
    Aquatic Microbial Ecology, Dec 2020
    DOI: 10.3354/ame01950
  3. Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea
    Wei Qin, Yue Zheng, Feng Zhao, Yulin Wang, Hidetoshi Urakawa, Willm Martens-Habbena, Haodong Liu, Xiaowu Huang, Xinxu Zhang, Tatsunori Nakagawa, Daniel R. Mende, Annette Bollmann, Baozhan Wang, Yao Zhang, Shady A. Amin, Jeppe L. Nielsen, Koji Mori, Reiji Takahashi, E. Virginia Armbrust, Mari-K. H. Winkler, Edward F. DeLong, Meng Li, Po-Heng Lee, Jizhong Zhou, Chuanlun Zhang, Tong Zhang, David A. Stahl, and Anitra E. Ingalls
    The ISME Journal, Oct 2020
    DOI: 10.1038/s41396-020-0710-7
  4. Latitudinal constraints on the abundance and activity of the cyanobacterium UCYN-A and other marine diazotrophs in the North Pacific
    Mary R. Gradoville, Hanna Farnelid, Angelicque E. White, Kendra A. Turk-Kubo, Brittany Stewart, François Ribalet, Sara Ferrón, Paulina Pinedo-Gonzalez, E. Virginia Armbrust, David M. Karl, Seth John, and Jonathan P. Zehr
    Limnology and Oceanography, 2020
    DOI: 10.1002/lno.11423
  5. The Importance of the Phytoplankton “Middle Class” to Ocean Net Community Production
    Lauren W. Juranek, Angelicque E. White, Mathilde Dugenne, Fernanda Henderikx Freitas, Stephanie Dutkiewicz, Francois Ribalet, Sara Ferrón, E. Virginia Armbrust, and David M. Karl
    Global Biogeochemical Cycles, 2020
    DOI: 10.1029/2020GB006702

2019

2019

  1. Patterns of diatom diversity correlate with dissolved trace metal concentrations and longitudinal position in the northeast Pacific coastal-offshore transition zone
    P. Dreux Chappell, E. Virginia Armbrust, Katherine A. Barbeau, Randelle M. Bundy, James W. Moffett, Jagruti Vedamati, and Bethany D. Jenkins
    Marine Ecology Progress Series, Jan 2019
    DOI: 10.3354/meps12810
  2. Fe limitation decreases transcriptional regulation over the diel cycle in the model diatom Thalassiosira pseudonana
    Johanna A. L. Goldman, Megan J. Schatz, Chris T. Berthiaume, Sacha N. Coesel, Mónica V. Orellana, and E. Virginia Armbrust
    PLOS ONE, Sep 2019
    DOI: 10.1371/journal.pone.0222325
  3. Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean
    Samuel T. Wilson, Nicholas J. Hawco, E. Virginia Armbrust, Benedetto Barone, Karin M. Björkman, Angela K. Boysen, Macarena Burgos, Timothy J. Burrell, John R. Casey, Edward F. DeLong, Mathilde Dugenne, Stephanie Dutkiewicz, Sonya T. Dyhrman, Sara Ferrón, Michael J. Follows, Rhea K. Foreman, Carolina P. Funkey, Matthew J. Harke, Britt A. Henke, Christopher N. Hill, Annette M. Hynes, Anitra E. Ingalls, Oliver Jahn, Rachel L. Kelly, Angela N. Knapp, Ricardo M. Letelier, Francois Ribalet, Eric M. Shimabukuro, Ryan K. S. Tabata, Kendra A. Turk-Kubo, Angelicque E. White, Jonathan P. Zehr, Seth John, and David M. Karl
    Science, Sep 2019
    DOI: 10.1126/science.aax4767
  4. SeaFlow data v1, high-resolution abundance, size and biomass of small phytoplankton in the North Pacific
    François Ribalet, Chris Berthiaume, Annette Hynes, Jarred Swalwell, Michael Carlson, Sophie Clayton, Gwenn Hennon, Camille Poirier, Eric Shimabukuro, Angelicque White, and E. Virginia Armbrust
    Scientific Data, Nov 2019
    DOI: 10.1038/s41597-019-0292-2
  5. Sulfonate-based networks between eukaryotic phytoplankton and heterotrophic bacteria in the surface ocean
    Bryndan P. Durham, Angela K. Boysen, Laura T. Carlson, Ryan D. Groussman, Katherine R. Heal, Kelsy R. Cain, Rhonda L. Morales, Sacha N. Coesel, Robert M. Morris, Anitra E. Ingalls, and E. Virginia Armbrust
    Nature Microbiology, Oct 2019
    DOI: 10.1038/s41564-019-0507-5

2018

2018

  1. Sexual ancestors generated an obligate asexual and globally dispersed clone within the model diatom species Thalassiosira pseudonana
    Julie A. Koester, Chris T. Berthiaume, Naozumi Hiranuma, Micaela S. Parker, Vaughn Iverson, Rhonda Morales, Walter L. Ruzzo, and E. Virginia Armbrust
    Scientific Reports, Jul 2018
    DOI: 10.1038/s41598-018-28630-4
  2. Accumulation of NO2-cobalamin in nutrient-stressed ammonia-oxidizing archaea and in the oxygen deficient zone of the eastern tropical North Pacific
    Katherine R. Heal, Wei Qin, Shady A. Amin, Allan H. Devol, James W. Moffett, E. Virginia Armbrust, David A. Stahl, and Anitra E. Ingalls
    Environmental Microbiology Reports, 2018
    DOI: 10.1111/1758-2229.12664
  3. Comparative Genomic Analysis of Vibrio diabolicus and Six Taxonomic Synonyms: A First Look at the Distribution and Diversity of the Expanded Species
    Jeffrey W. Turner, James J. Tallman, Amanda Macias, Lee J. Pinnell, Nicole C. Elledge, Danial Nasr Azadani, William B. Nilsson, Rohinee N. Paranjpye, E. V. Armbrust, and Mark S. Strom
    Frontiers in Microbiology, 2018
  4. Ocean acidification conditions increase resilience of marine diatoms
    Jacob J. Valenzuela, Adrián Lomana, Allison Lee, E. V. Armbrust, Mónica V. Orellana, and Nitin S. Baliga
    Nature Communications, Jun 2018
    DOI: 10.1038/s41467-018-04742-3
  5. Relative impacts of light, temperature, and reactive oxygen on thaumarchaeal ammonia oxidation in the North Pacific Ocean
    Rachel E. A. Horak, Wei Qin, Anthony D. Bertagnolli, Alexa Nelson, Katherine R. Heal, Hantten Han, Maija Heller, Andrew J. Schauer, Wade H. Jeffrey, E. Virginia Armbrust, James W. Moffett, Anitra E. Ingalls, David A. Stahl, and Allan H. Devol
    Limnology and Oceanography, 2018
    DOI: 10.1002/lno.10665
  6. Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations
    Wei Qin, Shady A. Amin, Rachel A. Lundeen, Katherine R. Heal, Willm Martens-Habbena, Serdar Turkarslan, Hidetoshi Urakawa, Kyle C. Costa, Erik L. Hendrickson, Tony Wang, David AC Beck, Sonia M. Tiquia-Arashiro, Fred Taub, Andrew D. Holmes, Neeraja Vajrala, Paul M. Berube, Todd M. Lowe, James W. Moffett, Allan H. Devol, Nitin S. Baliga, Daniel J. Arp, Luis A. Sayavedra-Soto, Murray Hackett, E. Virginia Armbrust, Anitra E. Ingalls, and David A. Stahl
    The ISME Journal, Feb 2018
    DOI: 10.1038/ismej.2017.186
  7. Daily changes in phytoplankton lipidomes reveal mechanisms of energy storage in the open ocean
    Kevin W. Becker, James R. Collins, Bryndan P. Durham, Ryan D. Groussman, Angelicque E. White, Helen F. Fredricks, Justin E. Ossolinski, Daniel J. Repeta, Paul Carini, E. Virginia Armbrust, and Benjamin A. S. Van Mooy
    Nature Communications, Dec 2018
    DOI: 10.1038/s41467-018-07346-z

2017

2017

  1. Dynamics of Teleaulax-like cryptophyes during the decline of a red water bloom in the Columbia River Estuary
    M. Hamilton, G.M.M. Hennon, J. Needoba, R. Morales, T.D. Peterson, M. Schatz, J. Swalwell, E.V. Armbrust, and F. Ribalet
    Journal of Plankton Research, 2017
    DOI: 10.1093/plankt/fbx029
  2. Development of a molecular-based index for assessing iron status in bloom-forming pennate diatoms
    A. Marchetti, C. Marino, N. Cohen, I. Oleinikov, K. Delong, B. Twining, and E.V. Armbrust
    Journal of Phycology, 2017
    DOI: 10.1111/jpy.12539
  3. Influence of oxygen availability on the activities of ammonia-oxidizing archaea
    Wei Qin, Kelley A. Meinhardt, James W. Moffett, Allan H. Devol, E. Virginia Armbrust, Anitra E. Ingalls, and David A. Stahl
    Environmental Microbiology Reports, 2017
    DOI: 10.1111/1758-2229.12525
  4. Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota
    Wei Qin, Katherine R. Heal, Rasika Ramdasi, Julia N. Kobelt, Willm Martens-Habbena, Anthony D. Bertagnolli, Shady A. Amin, Christopher B. Walker, Hidetoshi Urakawa, Martin Könneke, Allan H. Devol, James W. Moffett, E. Virginia Armbrust, Grant J. Jensen, Anitra E. Ingalls, and David A. Stahl
    International Journal of Systematic and Evolutionary Microbiology, 2017
    DOI: 10.1099/ijsem.0.002416
  5. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus
    Thomas Mock, Robert P. Otillar, Jan Strauss, Mark McMullan, Pirita Paajanen, Jeremy Schmutz, Asaf Salamov, Remo Sanges, Andrew Toseland, Ben J. Ward, Andrew E. Allen, Christopher L. Dupont, Stephan Frickenhaus, Florian Maumus, Alaguraj Veluchamy, Taoyang Wu, Kerrie W. Barry, Angela Falciatore, Maria I. Ferrante, Antonio E. Fortunato, Gernot Glöckner, Ansgar Gruber, Rachel Hipkin, Michael G. Janech, Peter G. Kroth, Florian Leese, Erika A. Lindquist, Barbara R. Lyon, Joel Martin, Christoph Mayer, Micaela Parker, Hadi Quesneville, James A. Raymond, Christiane Uhlig, Ruben E. Valas, Klaus U. Valentin, Alexandra Z. Worden, E. Virginia Armbrust, Matthew D. Clark, Chris Bowler, Beverley R. Green, Vincent Moulton, Cock Oosterhout, and Igor V. Grigoriev
    Nature, Jan 2017
    DOI: 10.1038/nature20803
  6. Probing the evolution, ecology and physiology of marine protists using transcriptomics
    David A. Caron, Harriet Alexander, Andrew E. Allen, John M. Archibald, E. Virginia Armbrust, Charles Bachy, Callum J. Bell, Arvind Bharti, Sonya T. Dyhrman, Stephanie M. Guida, Karla B. Heidelberg, Jonathan Z. Kaye, Julia Metzner, Sarah R. Smith, and Alexandra Z. Worden
    Nature Reviews Microbiology, Jan 2017
    DOI: 10.1038/nrmicro.2016.160
  7. Ubiquitous marine bacterium inhibits diatom cell division
    Helena M. Tol, Shady A. Amin, and E. Virginia Armbrust
    The ISME Journal, Jan 2017
    DOI: 10.1038/ismej.2016.112
  8. Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera
    Samuel T. Wilson, Frank O. Aylward, Francois Ribalet, Benedetto Barone, John R. Casey, Paige E. Connell, John M. Eppley, Sara Ferrón, Jessica N. Fitzsimmons, Christopher T. Hayes, Anna E. Romano, Kendra A. Turk-Kubo, Alice Vislova, E. Virginia Armbrust, David A. Caron, Matthew J. Church, Jonathan P. Zehr, David M. Karl, and Edward F. DeLong
    Nature Microbiology, Jul 2017
    DOI: 10.1038/nmicrobiol.2017.118
  9. Recognition cascade and metabolite transfer in a marine bacteria-phytoplankton model system
    Bryndan P. Durham, Stephen P. Dearth, Shalabh Sharma, Shady A. Amin, Christa B. Smith, Shawn R. Campagna, E. Virginia Armbrust, and Mary Ann Moran
    Environmental Microbiology, 2017
    DOI: 10.1111/1462-2920.13834
  10. Two distinct pools of B12 analogs reveal community interdependencies in the ocean
    Katherine R. Heal, Wei Qin, Francois Ribalet, Anthony D. Bertagnolli, Willow Coyote-Maestas, Laura R. Hmelo, James W. Moffett, Allan H. Devol, E. Virginia Armbrust, David A. Stahl, and Anitra E. Ingalls
    Proceedings of the National Academy of Sciences, Jan 2017
    DOI: 10.1073/pnas.1608462114

2016

2016

  1. Genomic evidence of adaptive evolution in emergent Vibrio parahaemolyticus ecotypes
    Jeffrey W. Turner, Chris T. Berthiaume, Rhonda Morales, E. Virginia Armbrust, and Mark S. Strom
    Elementa: Science of the Anthropocene, Jul 2016
    DOI: 10.12952/journal.elementa.000117
  2. Scalable clustering algorithms for continuous environmental flow cytometry
    Jeremy Hyrkas, Sophie Clayton, Francois Ribalet, Daniel Halperin, E. Virginia Armbrust, and Bill Howe
    Bioinformatics, Feb 2016
    DOI: 10.1093/bioinformatics/btv594
  3. The evolution of silicon transporters in diatoms
    Colleen A. Durkin, Julie A. Koester, Sara J. Bender, and E. Virginia Armbrust
    Journal of Phycology, 2016
    DOI: 10.1111/jpy.12441

2015

2015

  1. Confounding effects of oxygen and temperature on the TEX86 signature of marine Thaumarchaeota
    Wei Qin, Laura T. Carlson, E. Virginia Armbrust, Allan H. Devol, James W. Moffett, David A. Stahl, and Anitra E. Ingalls
    Proceedings of the National Academy of Sciences, Sep 2015
    DOI: 10.1073/pnas.1501568112
  2. Cryptic carbon and sulfur cycling between surface ocean plankton
    Bryndan P. Durham, Shalabh Sharma, Haiwei Luo, Christa B. Smith, Shady A. Amin, Sara J. Bender, Stephen P. Dearth, Benjamin A. S. Van Mooy, Shawn R. Campagna, Elizabeth B. Kujawinski, E. Virginia Armbrust, and Mary Ann Moran
    Proceedings of the National Academy of Sciences, Jan 2015
    DOI: 10.1073/pnas.1413137112
  3. Diatom acclimation to elevated CO2 via cAMP signalling and coordinated gene expression
    Gwenn M. M. Hennon, Justin Ashworth, Ryan D. Groussman, Chris Berthiaume, Rhonda L. Morales, Nitin S. Baliga, Mónica V. Orellana, and E. V. Armbrust
    Nature Climate Change, Aug 2015
    DOI: 10.1038/nclimate2683
  4. Diversity and Evolutionary History of Iron Metabolism Genes in Diatoms
    Ryan D. Groussman, Micaela S. Parker, and E. Virginia Armbrust
    PLOS ONE, Jun 2015
    DOI: 10.1371/journal.pone.0129081
  5. Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria
    S. A. Amin, L. R. Hmelo, H. M. Tol, B. P. Durham, L. T. Carlson, K. R. Heal, R. L. Morales, C. T. Berthiaume, M. S. Parker, B. Djunaedi, A. E. Ingalls, M. R. Parsek, M. A. Moran, and E. V. Armbrust
    Nature, Jun 2015
    DOI: 10.1038/nature14488
  6. Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre
    Francois Ribalet, Jarred Swalwell, Sophie Clayton, Valeria Jiménez, Sebastian Sudek, Yajuan Lin, Zackary I. Johnson, Alexandra Z. Worden, and E. Virginia Armbrust
    Proceedings of the National Academy of Sciences, Jun 2015
    DOI: 10.1073/pnas.1424279112
  7. Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage
    Ansgar Gruber, Gabrielle Rocap, Peter G. Kroth, E. Virginia Armbrust, and Thomas Mock
    The Plant Journal, 2015
    DOI: 10.1111/tpj.12734
  8. The production of nitric oxide by marine ammonia-oxidizing archaea and inhibition of archaeal ammonia oxidation by a nitric oxide scavenger
    Willm Martens-Habbena, Wei Qin, Rachel E. A. Horak, Hidetoshi Urakawa, Andrew J. Schauer, James W. Moffett, E. Virginia Armbrust, Anitra E. Ingalls, Allan H. Devol, and David A. Stahl
    Environmental Microbiology, 2015
    DOI: 10.1111/1462-2920.12677
  9. Uncovering hidden worlds of ocean biodiversity
    E. Virginia Armbrust, and Stephen R. Palumbi
    Science, 2015
    DOI: 10.1126/science.aaa7378

2014

2014

  2. Acclimation conditions modify physiological response of the diatom Thalassiosira pseudonana to elevated CO2 concentrations in a nitrate-limited chemostat
    Gwenn M. M. Hennon, Paul Quay, Rhonda L. Morales, Lyndsey M. Swanson, and E. Virginia Armbrust
    Journal of Phycology, 2014
    DOI: 10.1111/jpy.12156
  3. Determination of four forms of vitamin B12 and other B vitamins in seawater by liquid chromatography/tandem mass spectrometry
    Katherine R. Heal, Laura Truxal Carlson, Allan H. Devol, E. Virginia Armbrust, James W. Moffett, David A. Stahl, and Anitra E. Ingalls
    Rapid Communications in Mass Spectrometry, 2014
    DOI: 10.1002/rcm.7040
  4. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
    Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S. Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M. Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B. Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C. Posewitz, Karin Rengefors, Giovanna Romano, Mary E. Rumpho, Tatiana Rynearson, Kelly B. Schilling, Declan C. Schroeder, Alastair G. B. Simpson, Claudio H. Slamovits, David R. Smith, G. Jason Smith, Sarah R. Smith, Heidi M. Sosik, Peter Stief, Edward Theriot, Scott N. Twary, Pooja E. Umale, Daniel Vaulot, Boris Wawrik, Glen L. Wheeler, William H. Wilson, Yan Xu, Adriana Zingone, and Alexandra Z. Worden
    PLOS Biology, Jun 2014
    DOI: 10.1371/journal.pbio.1001889
  5. Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation
    Wei Qin, Shady A. Amin, Willm Martens-Habbena, Christopher B. Walker, Hidetoshi Urakawa, Allan H. Devol, Anitra E. Ingalls, James W. Moffett, E. Virginia Armbrust, and David A. Stahl
    Proceedings of the National Academy of Sciences, Aug 2014
    DOI: 10.1073/pnas.1324115111
  6. Taking the pulse of ocean microbes
    E. Virginia Armbrust
    Science, Jul 2014
    DOI: 10.1126/science.1256578
  7. The genetic potential for key biogeochemical processes in Arctic frost flowers and young sea ice revealed by metagenomic analysis
    Jeff S. Bowman, Chris T. Berthiaume, E. Virginia Armbrust, and Jody W. Deming
    FEMS Microbiology Ecology, Aug 2014
    DOI: 10.1111/1574-6941.12331
  8. Assessment of the potential for copper limitation of ammonia oxidation by Archaea in a dynamic estuary
    Jeremy E. Jacquot, Rachel E. A. Horak, Shady A. Amin, Allan H. Devol, Anitra E. Ingalls, E. Virginia Armbrust, David A. Stahl, and James W. Moffett
    Marine Chemistry, May 2014
    DOI: 10.1016/j.marchem.2014.02.002
  9. Transcriptional responses of three model diatoms to nitrate limitation of growth
    Sara Bender, Colleen Durkin, Chris Berthiaume, Rhonda Morales, and E. Virginia Armbrust
    Frontiers in Marine Science, 2014

2013

2013

  1. Copper requirements of the ammonia-oxidizing archaeon Nitrosopumilus maritimus SCM1 and implications for nitrification in the marine environment
    Shady A. Amin, James W. Moffett, Willm Martens-Habbena, Jeremy E. Jacquot, Yang Han, Allan Devol, Anitra E. Ingalls, David A. Stahl, and E. Virginia Armbrust
    Limnology and Oceanography, 2013
    DOI: 10.4319/lo.2013.58.6.2037
  2. Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea
    Rachel E. A. Horak, Wei Qin, Andy J. Schauer, E. Virginia Armbrust, Anitra E. Ingalls, James W. Moffett, David A. Stahl, and Allan H. Devol
    The ISME Journal, Oct 2013
    DOI: 10.1038/ismej.2013.75
  3. Identification of G protein-coupled receptor signaling pathway proteins in marine diatoms using comparative genomics
    Jesse A. Port, Micaela S. Parker, Robin B. Kodner, James C. Wallace, E. Virginia Armbrust, and Elaine M. Faustman
    BMC Genomics, Jul 2013
    DOI: 10.1186/1471-2164-14-503
  4. Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana
    Justin Ashworth, Sacha Coesel, Allison Lee, E. Virginia Armbrust, Mónica V. Orellana, and Nitin S. Baliga
    Proceedings of the National Academy of Sciences, Apr 2013
    DOI: 10.1073/pnas.1300962110
  5. Positive Selection within a Diatom Species Acts on Putative Protein Interactions and Transcriptional Regulation
    Julie A. Koester, Willie J. Swanson, and E. Virginia Armbrust
    Molecular Biology and Evolution, Feb 2013
    DOI: 10.1093/molbev/mss242
  6. Real-time collaborative analysis with (almost) pure SQL: a case study in biogeochemical oceanography
    Daniel Halperin, Francois Ribalet, Konstantin Weitz, Mak A. Saito, Bill Howe, and E. Virginia Armbrust
    Proceedings of the 25th International Conference on Scientific and Statistical Database Management, Jul 2013
    DOI: 10.1145/2484838.2484880
  7. Silicic acid supplied to coastal diatom communities influences cellular silicification and the potential export of carbon
    Colleen A. Durkin, Sara J. Bender, Kit Yu Karen Chan, Kelsey Gaessner, Daniel Grünbaum, and E. Virginia Armbrust
    Limnology and Oceanography, 2013
    DOI: 10.4319/lo.2013.58.5.1707
  8. SQLShare: Scientific workflow via relational view sharing
    Bill Howe, Francois Ribalet, Daniel Halperin, Sagar Chitnis, and E Virginia Armbrust
    Computing in Science and Engineering, Special Issue on Science Data Management, 2013
  9. The influence of net community production and phytoplankton community structure on CO2 uptake in the Gulf of Alaska
    Hilary I. Palevsky, Francois Ribalet, Jarred E. Swalwell, Catherine E. Cosca, Edward D. Cokelet, Richard A. Feely, E. Virginia Armbrust, and Paul D. Quay
    Global Biogeochemical Cycles, 2013
    DOI: 10.1002/gbc.20058

2012

2012

  1. Interactions between Diatoms and Bacteria
    Shady A. Amin, Micaela S. Parker, and E. Virginia Armbrust
    Microbiology and Molecular Biology Reviews : MMBR, Sep 2012
    DOI: 10.1128/MMBR.00007-12
  2. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
    Bruce A. Curtis, Goro Tanifuji, Fabien Burki, Ansgar Gruber, Manuel Irimia, Shinichiro Maruyama, Maria C. Arias, Steven G. Ball, Gillian H. Gile, Yoshihisa Hirakawa, Julia F. Hopkins, Alan Kuo, Stefan A. Rensing, Jeremy Schmutz, Aikaterini Symeonidi, Marek Elias, Robert J. M. Eveleigh, Emily K. Herman, Mary J. Klute, Takuro Nakayama, Miroslav Oborník, Adrian Reyes-Prieto, E. Virginia Armbrust, Stephen J. Aves, Robert G. Beiko, Pedro Coutinho, Joel B. Dacks, Dion G. Durnford, Naomi M. Fast, Beverley R. Green, Cameron J. Grisdale, Franziska Hempel, Bernard Henrissat, Marc P. Höppner, Ken-Ichiro Ishida, Eunsoo Kim, Luděk Kořený, Peter G. Kroth, Yuan Liu, Shehre-Banoo Malik, Uwe G. Maier, Darcy McRose, Thomas Mock, Jonathan A. D. Neilson, Naoko T. Onodera, Anthony M. Poole, Ellen J. Pritham, Thomas A. Richards, Gabrielle Rocap, Scott W. Roy, Chihiro Sarai, Sarah Schaack, Shu Shirato, Claudio H. Slamovits, David F. Spencer, Shigekatsu Suzuki, Alexandra Z. Worden, Stefan Zauner, Kerrie Barry, Callum Bell, Arvind K. Bharti, John A. Crow, Jane Grimwood, Robin Kramer, Erika Lindquist, Susan Lucas, Asaf Salamov, Geoffrey I. McFadden, Christopher E. Lane, Patrick J. Keeling, Michael W. Gray, Igor V. Grigoriev, and John M. Archibald
    Nature, Dec 2012
    DOI: 10.1038/nature11681
  3. Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability
    Adrian Marchetti, David M. Schruth, Colleen A. Durkin, Micaela S. Parker, Robin B. Kodner, Chris T. Berthiaume, Rhonda Morales, Andrew E. Allen, and E. Virginia Armbrust
    Proceedings of the National Academy of Sciences, Feb 2012
    DOI: 10.1073/pnas.1118408109
  4. Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges
    Adam Monier, Rory M. Welsh, Chelle Gentemann, George Weinstock, Erica Sodergren, E. Virginia Armbrust, Jonathan A. Eisen, and Alexandra Z. Worden
    Environmental Microbiology, 2012
    DOI: 10.1111/j.1462-2920.2011.02576.x
  7. Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota
    Vaughn Iverson, Robert M. Morris, Christian D. Frazar, Chris T. Berthiaume, Rhonda L. Morales, and E. Virginia Armbrust
    Science, Feb 2012
    DOI: 10.1126/science.1212665

2011

2011

  1. flowPhyto: enabling automated analysis of microscopic algae from continuous flow cytometric data
    Francois Ribalet, David M. Schruth, and E. Virginia Armbrust
    Bioinformatics, Mar 2011
    DOI: 10.1093/bioinformatics/btr003
  2. SeaFlow: A novel underway flow-cytometer for continuous observations of phytoplankton in the ocean
    Jarred E Swalwell, Francois Ribalet, and E. Virginia Armbrust
    Limnology and Oceanography: Methods, 2011
    DOI: 10.4319/lom.2011.9.466

2010

2010

  1. Digital expression profiling of novel diatom transcripts provides insight into their biological functions
    Uma Maheswari, Kamel Jabbari, Jean-Louis Petit, Betina M. Porcel, Andrew E. Allen, Jean-Paul Cadoret, Alessandra De Martino, Marc Heijde, Raymond Kaas, Julie La Roche, Pascal J. Lopez, Véronique Martin-Jézéquel, Agnès Meichenin, Thomas Mock, Micaela Schnitzler Parker, Assaf Vardi, E. Virginia Armbrust, Jean Weissenbach, Michaël Katinka, and Chris Bowler
    Genome Biology, Aug 2010
    DOI: 10.1186/gb-2010-11-8-r85
  2. Flow Cytometry in Phytoplankton Research
    Heidi M. Sosik, Robert J. Olson, and E. Virginia Armbrust
    Chlorophyll a Fluorescence in Aquatic Sciences: Methods and Applications, 2010
    DOI: 10.1007/978-90-481-9268-7_8
  3. Genome size differentiates co-occurring populations of the planktonic diatom Ditylum brightwellii(Bacillariophyta)
    Julie A. Koester, Jarred E. Swalwell, Peter Dassow, and E. Virginia Armbrust
    BMC Evolutionary Biology, Jan 2010
    DOI: 10.1186/1471-2148-10-1
  4. Iron and silicic acid effects on phytoplankton productivity, diversity, and chemical composition in the central equatorial Pacific Ocean
    Adrian Marchetti, Diana E. Varela, Veronica P. Lance, Veronica P. Lance, Matteo Palmucci, Mario Giordano, and E. Virginia Armbrust
    Limnology and Oceanography, 2010
    DOI: 10.4319/lo.2010.55.1.0011
  5. Mass Sexual Reproduction in the Toxigenic Diatoms Pseudo-Nitzschia Australis and P. Pungens (bacillariophyceae) on the Washington Coast, Usa1
    Karie E. Holtermann, Stephen S. Bates, Vera L. Trainer, Anthony Odell, and E. Virginia Armbrust
    Journal of Phycology, 2010
    DOI: 10.1111/j.1529-8817.2009.00792.x
  6. pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
    Frederick A. Matsen, Robin B. Kodner, and E Virginia Armbrust
    BMC Bioinformatics, Oct 2010
    DOI: 10.1186/1471-2105-11-538
  7. Unveiling a phytoplankton hotspot at a narrow boundary between coastal and offshore waters
    Francois Ribalet, Adrian Marchetti, Katherine A. Hubbard, Kristina Brown, Colleen A. Durkin, Rhonda Morales, Marie Robert, Jarred E. Swalwell, Philippe D. Tortell, and E. Virginia Armbrust
    Proceedings of the National Academy of Sciences, Sep 2010
    DOI: 10.1073/pnas.1005638107

2009

2009

  1. Metapopulation Structure in the Planktonic Diatom Ditylum brightwellii (Bacillariophyceae)
    Tatiana A. Rynearson, Ellen O. Lin, and E. Virginia Armbrust
    Protist, Feb 2009
    DOI: 10.1016/j.protis.2008.10.003
  2. Building an OptIPlanet collaboratory to support microbial metagenomics
    Larry Smarr, Paul Gilna, Phil Papadopoulos, Thomas A. DeFanti, Greg Hidley, John Wooley, E. Virginia Armbrust, Forest Rohwer, and Eric Frost
    Future Generation Computer Systems, Feb 2009
    DOI: 10.1016/j.future.2008.06.009
  3. Chitin in Diatoms and Its Association with the Cell Wall
    Colleen A. Durkin, Thomas Mock, and E. Virginia Armbrust
    Eukaryotic Cell, Jul 2009
    DOI: 10.1128/EC.00079-09
  4. Ferritin is used for iron storage in bloom-forming marine pennate diatoms
    Adrian Marchetti, Micaela S. Parker, Lauren P. Moccia, Ellen O. Lin, Angele L. Arrieta, Francois Ribalet, Michael E. P. Murphy, Maria T. Maldonado, and E. Virginia Armbrust
    Nature, Jan 2009
    DOI: 10.1038/nature07539
  5. Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas
    Alexandra Z. Worden, Jae-Hyeok Lee, Thomas Mock, Pierre Rouzé, Melinda P. Simmons, Andrea L. Aerts, Andrew E. Allen, Marie L. Cuvelier, Evelyne Derelle, Meredith V. Everett, Elodie Foulon, Jane Grimwood, Heidrun Gundlach, Bernard Henrissat, Carolyn Napoli, Sarah M. McDonald, Micaela S. Parker, Stephane Rombauts, Aasf Salamov, Peter Von Dassow, Jonathan H. Badger, Pedro M. Coutinho, Elif Demir, Inna Dubchak, Chelle Gentemann, Wenche Eikrem, Jill E. Gready, Uwe John, William Lanier, Erika A. Lindquist, Susan Lucas, Klaus F. X. Mayer, Herve Moreau, Fabrice Not, Robert Otillar, Olivier Panaud, Jasmyn Pangilinan, Ian Paulsen, Benoit Piegu, Aaron Poliakov, Steven Robbens, Jeremy Schmutz, Eve Toulza, Tania Wyss, Alexander Zelensky, Kemin Zhou, E. Virginia Armbrust, Debashish Bhattacharya, Ursula W. Goodenough, Yves Peer, and Igor V. Grigoriev
    Science, Apr 2009
    DOI: 10.1126/science.1167222
  6. Accelerate Synthesis in Ecology and Environmental Sciences
    Stephen R. Carpenter, E. Virginia Armbrust, Peter W. Arzberger, F. Stuart Chapin, James J. Elser, Edward J. Hackett, Anthony R. Ives, Peter M. Kareiva, Mathew A. Leibold, Per Lundberg, Marc Mangel, Nirav Merchant, William W. Murdoch, Margaret A. Palmer, Debra P. C. Peters, Steward T. A. Pickett, Kathleen K. Smith, Diana H. Wall, and Ann S. Zimmerman
    BioScience, Sep 2009
    DOI: 10.1525/bio.2009.59.8.11
  7. The life of diatoms in the world’s oceans
    E. Virginia Armbrust
    Nature, May 2009
    DOI: 10.1038/nature08057
  8. Update of the Diatom EST Database: a new tool for digital transcriptomics
    Uma Maheswari, Thomas Mock, E. Virginia Armbrust, and Chris Bowler
    Nucleic Acids Research, Jan 2009
    DOI: 10.1093/nar/gkn905

2008

2008

  1. Genomic insights into marine microalgae
    M.S. Parker, T. Mock, and E.V. Armbrust
    Annual Review of Genetics, 2008
    DOI: 10.1146/annurev.genet.42.110807.091417
  2. An Introduction to the World’s Oceans
    K. Svderup, and E.V. Armbrust
    2008
  3. The Phaeodactylum genome reveals the evolutionary history of diatom genomes
    Chris Bowler, Andrew E. Allen, Jonathan H. Badger, Jane Grimwood, Kamel Jabbari, Alan Kuo, Uma Maheswari, Cindy Martens, Florian Maumus, Robert P. Otillar, Edda Rayko, Asaf Salamov, Klaas Vandepoele, Bank Beszteri, Ansgar Gruber, Marc Heijde, Michael Katinka, Thomas Mock, Klaus Valentin, Fréderic Verret, John A. Berges, Colin Brownlee, Jean-Paul Cadoret, Anthony Chiovitti, Chang Jae Choi, Sacha Coesel, Alessandra De Martino, J. Chris Detter, Colleen Durkin, Angela Falciatore, Jérome Fournet, Miyoshi Haruta, Marie J. J. Huysman, Bethany D. Jenkins, Katerina Jiroutova, Richard E. Jorgensen, Yolaine Joubert, Aaron Kaplan, Nils Kröger, Peter G. Kroth, Julie La Roche, Erica Lindquist, Markus Lommer, Véronique Martin–Jézéquel, Pascal J. Lopez, Susan Lucas, Manuela Mangogna, Karen McGinnis, Linda K. Medlin, Anton Montsant, Marie-Pierre Oudot–Le Secq, Carolyn Napoli, Miroslav Obornik, Micaela Schnitzler Parker, Jean-Louis Petit, Betina M. Porcel, Nicole Poulsen, Matthew Robison, Leszek Rychlewski, Tatiana A. Rynearson, Jeremy Schmutz, Harris Shapiro, Magali Siaut, Michele Stanley, Michael R. Sussman, Alison R. Taylor, Assaf Vardi, Peter Dassow, Wim Vyverman, Anusuya Willis, Lucjan S. Wyrwicz, Daniel S. Rokhsar, Jean Weissenbach, E. Virginia Armbrust, Beverley R. Green, Yves Peer, and Igor V. Grigoriev
    Nature, Nov 2008
    DOI: 10.1038/nature07410
  4. A Model for Carbohydrate Metabolism in the Diatom Phaeodactylum tricornutum Deduced from Comparative Whole Genome Analysis
    Peter G. Kroth, Anthony Chiovitti, Ansgar Gruber, Veronique Martin-Jezequel, Thomas Mock, Micaela Schnitzler Parker, Michele S. Stanley, Aaron Kaplan, Lise Caron, Till Weber, Uma Maheswari, E. Virginia Armbrust, and Chris Bowler
    PLOS ONE, Jan 2008
    DOI: 10.1371/journal.pone.0001426
  5. Identification and Assessment of Domoic Acid Production in Oceanic Pseudo-Nitzschia (bacillariophyceae) from Iron-Limited Waters in the Northeast Subarctic Pacific1
    Adrian Marchetti, Nina Lundholm, Yuichi Kotaki, Katherine Hubbard, Paul J. Harrison, and E. Virginia Armbrust
    Journal of Phycology, 2008
    DOI: 10.1111/j.1529-8817.2008.00526.x
  6. Inter- and Intraspecific Community Structure Within the Diatom Genus Pseudo-Nitzschia (bacillariophyceae)1
    Katherine A. Hubbard, Gabrielle Rocap, and E. Virginia Armbrust
    Journal of Phycology, 2008
    DOI: 10.1111/j.1529-8817.2008.00518.x
  7. Inter- and Intraspecific Relationships Between Nuclear Dna Content and Cell Size in Selected Members of the Centric Diatom Genus Thalassiosira (bacillariophyceae)1
    Peter Von Dassow, Timothy W. Petersen, Victor A. Chepurnov, and E. Virginia Armbrust
    Journal of Phycology, 2008
    DOI: 10.1111/j.1529-8817.2008.00476.x
  8. Phytoplankton Calcification in a High-CO2 World
    M. Debora Iglesias-Rodriguez, Paul R. Halloran, Rosalind E. M. Rickaby, Ian R. Hall, Elena Colmenero-Hidalgo, John R. Gittins, Darryl R. H. Green, Toby Tyrrell, Samantha J. Gibbs, Peter Dassow, Eric Rehm, E. Virginia Armbrust, and Karin P. Boessenkool
    Science, Apr 2008
    DOI: 10.1126/science.1154122
  9. Population structure of the planktonic copepod Calanus pacificus in the North Pacific Ocean
    Mikelle L. Nuwer, Bruce W. Frost, and E. Virginia Armbrust
    Marine Biology, Dec 2008
    DOI: 10.1007/s00227-008-1068-y
  10. Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses
    Thomas Mock, Manoj Pratim Samanta, Vaughn Iverson, Chris Berthiaume, Matthew Robison, Karie Holtermann, Colleen Durkin, Sandra Splinter BonDurant, Kathryn Richmond, Matthew Rodesch, Toivo Kallas, Edward L. Huttlin, Francesco Cerrina, Michael R. Sussman, and E. Virginia Armbrust
    Proceedings of the National Academy of Sciences, Feb 2008
    DOI: 10.1073/pnas.0707946105

2007

2007

  1. Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage
    Marie-Pierre Oudot-Le Secq, Jane Grimwood, Harris Shapiro, E. Virginia Armbrust, Chris Bowler, and Beverley R. Green
    Molecular Genetics and Genomics, Apr 2007
    DOI: 10.1007/s00438-006-0199-4
  2. Genomes of Sea Microbes
    Mary Ann Moran, and E. Virginia Armbrust
    Oceanography, 2007
  3. Identification and Comparative Genomic Analysis of Signaling and Regulatory Components in the Diatom Thalassiosira Pseudonana1
    Anton Montsant, Andrew E. Allen, Sacha Coesel, Alessandra De Martino, Angela Falciatore, Manuela Mangogna, Magali Siaut, Marc Heijde, Kamel Jabbari, Uma Maheswari, Edda Rayko, Assaf Vardi, Kirk E. Apt, John A. Berges, Anthony Chiovitti, Aubrey K. Davis, Kimberlee Thamatrakoln, Masood Z. Hadi, Todd W. Lane, J. Casey Lippmeier, Diego Martinez, Micaela S. Parker, Gregory J. Pazour, Mak A. Saito, Dan S. Rokhsar, E. Virginia Armbrust, and Chris Bowler
    Journal of Phycology, 2007
    DOI: 10.1111/j.1529-8817.2007.00342.x
  4. Succession and Diel Transcriptional Response of the Glycolate-Utilizing Component of the Bacterial Community during a Spring Phytoplankton Bloom
    Winnie W. Y. Lau, Richard G. Keil, and E. Virginia Armbrust
    Applied and Environmental Microbiology, Apr 2007
    DOI: 10.1128/AEM.01965-06

2006

2006

  1. An Introduction to the World’s Oceans
    K. Svderup, and E.V. Armbrust
    2006
  2. Genomic Insights into Diatom Evolution and Metabolism
    E.V. Armbrust, T.A. Rynearson, and B.D. Jenkins
    Genome Evolution in Eukaryotic Microbes, 2006
  4. Oogamous Reproduction, with Two-Step Auxosporulation, in the Centric Diatom Thalassiosira Punctigera (bacillariophyta)
    Victor A. Chepurnov, David G. Mann, Peter Von Dassow, E. Virginia Armbrust, Koen Sabbe, Renaat Dasseville, and Wim Vyverman
    Journal of Phycology, 2006
    DOI: 10.1111/j.1529-8817.2006.00244.x
  5. Phylogeography of Calanus helgolandicus and the Black Sea copepod Calanus euxinus, with notes on Pseudocalanus elongatus (Copepoda, Calanoida)
    Ebru Unal, Bruce W. Frost, Virginia Armbrust, and Ahmet E. Kideys
    Deep Sea Research Part II: Topical Studies in Oceanography, Aug 2006
    DOI: 10.1016/j.dsr2.2006.03.017
  7. Spring bloom development, genetic variation, and population succession in the planktonic diatom Ditylum brightwellii
    T. A. Rynearson, J. A. Newton, and E. V. Armbrust
    Limnology and Oceanography, 2006
    DOI: 10.4319/lo.2006.51.3.1249

2005

2005

  1. Colloquium on diatom-copepod interactions
    G.A. Paffenhofer, A. Iaora, A. Miralto, J.T. Turner, G.S. Kleppel, M.R. D’Alcala, R. Casotti, G.S. Caldwell, G. Pohnert, A. fntana, D. Muller-Navarra, S.E. Jonasdottir, E.V. Armbrust, U. Bamstedt, S. Ban, M.G. Bentley, M. Boersma, M. Bundy, I. Buttino, A. Calbet, F. Carlotti, Y. Carotenuto, G. d’Ippolito, B. Frost, G. Guisande, W. Lampert, R.F. Lee, S. Mazza, M.G. Massocchi, J.C. Nejstgaard, S.A. Poulet, G. Romano, V. Smetacek, S. Uye, S. Wakeham, S. Watson, and T. Wichard
    Marine Ecology Progress Series, 2005

2004

2004

  3. The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism
    E. Virginia Armbrust, John A. Berges, Chris Bowler, Beverley R. Green, Diego Martinez, Nicholas H. Putnam, Shiguo Zhou, Andrew E. Allen, Kirk E. Apt, Michael Bechner, Mark A. Brzezinski, Balbir K. Chaal, Anthony Chiovitti, Aubrey K. Davis, Mark S. Demarest, J. Chris Detter, Tijana Glavina, David Goodstein, Masood Z. Hadi, Uffe Hellsten, Mark Hildebrand, Bethany D. Jenkins, Jerzy Jurka, Vladimir V. Kapitonov, Nils Kröger, Winnie W. Y. Lau, Todd W. Lane, Frank W. Larimer, J. Casey Lippmeier, Susan Lucas, Mónica Medina, Anton Montsant, Miroslav Obornik, Micaela Schnitzler Parker, Brian Palenik, Gregory J. Pazour, Paul M. Richardson, Tatiana A. Rynearson, Mak A. Saito, David C. Schwartz, Kimberlee Thamatrakoln, Klaus Valentin, Assaf Vardi, Frances P. Wilkerson, and Daniel S. Rokhsar
    Science, Oct 2004
    DOI: 10.1126/science.1101156

2002

2002

  2. Genetic Structure of the Mating-Type Locus of Chlamydomonas reinhardtii
    Patrick J Ferris, E Virginia Armbrust, and Ursula W Goodenough
    Genetics, Jan 2002
    DOI: 10.1093/genetics/160.1.181

2001

2001

  1. IDENTIFICATION AND DNA SEQUENCE OF A NEW H+-ATPase IN THE UNICELLULAR GREEN ALGA CHLAMYDOMONAS REINHARDTII (CHLOROPHYCEAE)
    A. Malcolm Campbell, Alison J. Coble, Lindsay D. Cohen, Toh Hean Ch’Ng, Kristin M. Russo, Elizabeth M. Long, and E. Virginia Armbrust
    Journal of Phycology, 2001
    DOI: 10.1046/j.1529-8817.2001.037004536.x
  2. Rapid Evolution of a Sexual Reproduction Gene in Centric Diatoms of the Genus Thalassiosira
    E. Virginia Armbrust, and H. M. Galindo
    Applied and Environmental Microbiology, Aug 2001
    DOI: 10.1128/AEM.67.8.3501-3513.2001

2000

2000

1999

1999

1995

1995

  1. Molecular genetics of sexuality in Chlamydomonas
    U.W. Goodenough, E.V. Armbrust, A.M. Campbell, and P.J. Ferris
    Annual Review of Plant Physiology and Plant Molecular Biology, 1995
    DOI: 10.1146/annurev.pp.46.060195.000321

1993

1993

1992

1992

1990

1990

  1. Pigments, size, and distributions of Synechococcus in the North Atlantic and Pacific Oceans
    Robert J. Olson, Sallie W. Chisholm, Erik R. Zettler, and E. Virginia Armbrust
    Limnology and Oceanography, 1990
    DOI: 10.4319/lo.1990.35.1.0045
  2. Role of Light and the Cell Cycle on the Induction of Spermatogenesis in a Centric Diatom1
    E. Virginia Armbrust, Sallie W. Chisholm, and Robert J. Olson
    Journal of Phycology, 1990
    DOI: 10.1111/j.0022-3646.1990.00470.x

1989

1989

  1. Effect of Light on the Cell Cycle of a Marine Synechococcus Strain
    E. V. Armbrust, J. D. Bowen, R. J. Olson, and S. W. Chisholm
    Applied and Environmental Microbiology, Feb 1989
    DOI: 10.1128/aem.55.2.425-432.1989

1988

1988

  1. Analysis of Synechococcus pigment types in the sea using single and dual beam flow cytometry
    R. J. Olson, S. W. Chisholm, E. R. Zettler, and E. V. Armbrust
    Deep Sea Research Part A. Oceanographic Research Papers, Mar 1988
    DOI: 10.1016/0198-0149(88)90019-2

1986

1986

  1. The individual cell in phytoplankton ecology: cell cycles and flow cytometry
    S.W. Chisholm, E.V. Armbrust, and R.J. Olson
    Bull. Fish. Aq. Sci, 1986